PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G356200.1.p
Common NameSb03g039840, SORBIDRAFT_03g039840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 594aa    MW: 63830.5 Da    PI: 7.5096
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G356200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-103684051954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Sobic.003G356200.1.p 368 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 405
                           554459******************************88 PP
2BELL93.81.6e-30235304372
                  BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +e q kk++L+s++eeV+krY+ y++q+qtvi+sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Sobic.003G356200.1.p 235 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSFETVAGFSNAAPFAAMALRAMAKHFKCLKSMILSQL 304
                           5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.5E-38165302IPR006563POX domain
PfamPF075269.8E-37170300IPR006563POX domain
PROSITE profilePS5007112.228346409IPR001356Homeobox domain
SMARTSM003897.4E-11349413IPR001356Homeobox domain
CDDcd000862.04E-13349410No hitNo description
SuperFamilySSF466894.28E-17351417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28352413IPR009057Homeodomain-like
PfamPF059206.3E-19366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSSAAGGYGG GAGSGAEPHC HGHGHGDFML HHHAQHIAAQ QLYHVPQHSR REKLRFPPDD  60
SPPHASASAP QQQHAGVAWP PPPPPPAFYS YASSSTSSYS PHSPTLAQAQ LVVAHGLAPP  120
PLSSQIPTQN FALSLSSSSS NPPPAPPPQQ RRAHAAPSAP FGPFTGYAAV LGRSRFLGPA  180
EKLLEEICDV GGAASHVDRS VSDEGVLDAD PMEAIDHDMD GADRAASDAG PISGAEQQWK  240
KTRLISMMEE VCKRYRLYYQ QVQTVINSFE TVAGFSNAAP FAAMALRAMA KHFKCLKSMI  300
LSQLRNTKVA AGKEGLSKDI VMFGLAGGSA AALQRASSMA AFGQPHNIWR PQRGLPERAV  360
SVLRAWLFEH FLHPYPTDGD KQMLAKQTGL TRNQVSNWFI NARVRLWKPM VEEIHNLEMR  420
QVHKHPVLDK GQHVLHHQTQ HSSESSGKPS DPSDSHLGQS SSLTRNHNIP ASQGFADELS  480
EMSHSIQQGQ VTFAYNGLST AHHSLASSQH HQQAGPMSGI GGAGNGGVSL TLGLHQNNRV  540
CIAEPLPESL PPNLAHRFGL EEVSDPYMMG SFGNQDRHFG KEMGGHLVHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16355413563Homeobox protein Meis2
4xrm_B2e-16355413563Homeobox protein Meis2
4xrs_A1e-16355412158Homeobox protein Meis1
4xrs_B1e-16355412158Homeobox protein Meis1
5bng_A2e-16355413159Homeobox protein Meis2
5bng_B2e-16355413159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G356200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283790.0KJ728379.1 Zea mays clone pUT6661 HB transcription factor (HB48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458762.10.0BEL1-like homeodomain protein 9
TrEMBLC5XPT00.0C5XPT0_SORBI; Uncharacterized protein
STRINGSb03g039840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.17e-66BEL1-like homeodomain 8