PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G365500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 275aa    MW: 29124.2 Da    PI: 6.4188
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G365500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.32e-253511553128
                   NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +e + w++F++r++++a+g r++r+t sgyWka g+   v+s+     +++++g+kkt+vfy+grap+g+kt+W m+eyr+
  Sobic.003G365500.2.p  35 GEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGVVYSSsaapaDRRAIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 115
                           46679*************************************9888887888***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.3661171IPR003441NAC domain
PfamPF023656.9E-1431114IPR003441NAC domain
SuperFamilySSF1019416.8E-2734121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTEAVHCANR AAGVRCAMMM HAGIHEMLRG GGAAGEGEPW FYFCPRQERE ARGGRPSRTT  60
PSGYWKAAGT PGVVYSSSAA PADRRAIGMK KTMVFYRGRA PSGTKTNWKM NEYRALQYDE  120
APAGPAAVGT DGSSSSSSTA HHHHAVPVPP PPPNVAPQLR SEFSLCRLYT KSGSLRQFDR  180
RPLGAAGGVV VVPGEDPAGP STAGVAASPP DDDDGSGSSS MQQQQRQQVT EERAANDPYG  240
DDMVVTTERE DAHGHDPFGD DVAILDALLY WPGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-18611737147NAC domain-containing protein 19
3swm_B1e-18611737147NAC domain-containing protein 19
3swm_C1e-18611737147NAC domain-containing protein 19
3swm_D1e-18611737147NAC domain-containing protein 19
3swp_A1e-18611737147NAC domain-containing protein 19
3swp_B1e-18611737147NAC domain-containing protein 19
3swp_C1e-18611737147NAC domain-containing protein 19
3swp_D1e-18611737147NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G365500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456679.10.0NAC domain-containing protein 90
TrEMBLA0A1W0W0I80.0A0A1W0W0I8_SORBI; Uncharacterized protein
STRINGSb03g040720.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.22e-41NAC domain containing protein 61