PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G367100.1.p

Common Name

Dof11, Sb03g040860, SORBIDRAFT_03g040860

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 336aa MW: 35258.1 Da PI: 4.5438

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G367100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	8.3e-38	33	89	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Sobic.003G367100.1.p 33 APNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 89 568***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-36	17	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-32	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MLSSHHEAML PYAPGPPPSL LVDRRYKQGG EAAPNCPRCD SPNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK SSLRSAADAA IASGGGRDAA FGHHRFPGPV 120 RPDLVLEGMV GNPSNPAGQA MPGGVPAATD GSTIDLAMLY AKFLNHPPAE EGVNAVTPES 180 AGQVVDEAFD TFSASSDLSP GVLAPLQFDP CHDGFGEWSA GGPVSSTGPS STASTTAATT 240 MLCADVSVQA AFGELNFAMD QSCFDSLGLP TDDVVGNLSS SWCSIVPGLS TLEDTKYDSL 300 DSFPDDALSL HEDMISGTDH DWSVDCQGLE ALYMP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G367100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582408	0.0	KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458818.1	0.0	dof zinc finger protein DOF5.1
TrEMBL	C5XQM2	0.0	C5XQM2_SORBI; Dof-type zinc finger protein 11
STRING	Sb03g040860.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G367100.1.p
Entrez Gene	8060971

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]