PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G390600.1.p
Common NameSb03g042810, SORBIDRAFT_03g042810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 704aa    MW: 73549.1 Da    PI: 6.7992
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G390600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15276335155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.003G390600.1.p 276 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 335
                           57*******************666664478446*************************98 PP
2AP246.78.1e-15378429155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.003G390600.1.p 378 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 429
                           57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-17276345IPR016177DNA-binding domain
CDDcd000185.95E-20276345No hitNo description
PfamPF008475.9E-12276335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15277344IPR001471AP2/ERF domain
SMARTSM003801.6E-29277349IPR001471AP2/ERF domain
PROSITE profilePS5103219.23277343IPR001471AP2/ERF domain
PRINTSPR003673.8E-6278289IPR001471AP2/ERF domain
CDDcd000181.27E-22378439No hitNo description
SuperFamilySSF541711.11E-17378439IPR016177DNA-binding domain
PfamPF008471.0E-9378429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18379438IPR001471AP2/ERF domain
SMARTSM003801.5E-33379443IPR001471AP2/ERF domain
PROSITE profilePS5103219.045379437IPR001471AP2/ERF domain
PRINTSPR003673.8E-6419439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPT QTDSTLISAA TTDDVSGDVC FNIPQDWSMR GSELSALVAE  60
PKLEDFLGGI SFSEQHHKAN CNMIPSTSST ACYASSGATA GYHHQLYHQP TSSALHFADS  120
VMVASSAGGV HDGGAMLSAA SANGSAGAGA ASANGSGSIG LSMIKNWLRS QPAPMQPRVA  180
AAESVQGLSL SMNMAGATQG AAGMPLLAGE RGRAPESVST SAQGGAVVTA PKEDSGGSGV  240
AATGALVAVS TDTGGSGASA DNTARKTVDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  300
REGQTRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPVNNYEKE LEDMKHMTRQ  360
EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  420
DIAAIKFRGL NAVTNFDMSR YDVKSILDSS ALPIGSAAKR LKEAEAAASA QHHAGVVSYD  480
VGRIASQLGD GGALAAAYGA HYHGAWPTIA FQPSAATGLY HPYAQPMRGW CKQEQDHAVI  540
AAAHSLQELH HLNLGAAAGA HDFFSAGQQA AMHGLGSMDN ASLEHSTGSN SVVYNGVGDS  600
NGSTVVGSGG YMMPMSAATA TATTAMVSHE QVHARAQGDH HDEAKQAAQM GYESYLVNAE  660
NYGGGRMSAA WATVSAPPAA SSNDNMADVG HGGAQLFSVW NDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G390600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313568.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A1B6Q7P10.0A0A1B6Q7P1_SORBI; Uncharacterized protein
STRINGSb03g042810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-123AP2 family protein