PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G400600.1.p
Common NameSb03g043690, SORBIDRAFT_03g043690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 485aa    MW: 50966 Da    PI: 6.2738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G400600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09290337455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Sobic.003G400600.1.p 290 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 337
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16284355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-10284341No hitNo description
PROSITE profilePS5088815.256286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16288354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6290337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPACFLN LNWDQSMAAA TAGDHLDPAL SSMVSSPASN STAAAATDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPPPQVGG AAPSGLPILE NLMPMAHLDQ  120
FLADPGFAER AARLSGFDGR PGGSGYGGAV PGQFGLPDAD PIDALKELEL GNGRDESSVS  180
DPASASAEMA LKGPSDGNAK KRKASGKGKG KDGPGSTAAK DLAKEESGGK RCKSADESNG  240
AEDNSTKGKA AQSNSENGGK KQGKDSTSKP PEPPKDYIHV RARRGEATDS HSLAERVRRE  300
KISQRMKLLQ DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP  360
NLLPKDIHQS CGPLQNSHFP LETSGAPLPY LNQPHQGNPL GCSLTGMDSQ SSMHPLDPAF  420
CRPMNSQHPF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQS QEIAPTSSNS YNGSLQTVHM  480
KMEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.32720.0leaf| ovary| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G400600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458978.10.0transcription factor bHLH79
TrEMBLC5XG710.0C5XG71_SORBI; Uncharacterized protein
STRINGSb03g043690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-64bHLH family protein