PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G409800.1.p
Common NameSb03g044440, SORBIDRAFT_03g044440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 256aa    MW: 27303.7 Da    PI: 8.4181
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G409800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.92.1e-32241571128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvka...eekewyfFskrdkkya.tgkrknratksgyWk 84 
                           lp GfrF+Ptdeel+ +yL++k+ + +l++  vi+++d+ +++PwdL p++v++    + e +fF++ +++   +g  + ra+ +g+W+
  Sobic.003G409800.1.p  24 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GVIPDADLARLHPWDLlPAAVQGaadADGERFFFHRPATRCWrKGGGAARAAGTGVWR 111
                           699***************************.99*************95554444222444889999877776527999*********** PP

                   NAM  85 atgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                            +gk++ v+s   ++ vg+k+tLvf  +   + g +tdW mheyrl
  Sobic.003G409800.1.p 112 PSGKETLVVSPrCKRPVGTKRTLVFCpRRGGRGGARTDWAMHEYRL 157
                           *******999867889**********544566789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4318196IPR003441NAC domain
PROSITE profilePS5100542.22824197IPR003441NAC domain
PfamPF023652.3E-2025157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEGRSGAWRL QQQQRGPGAP VAGLPIGFRF RPTDEELLLH YLRRKALACP LPAGVIPDAD  60
LARLHPWDLL PAAVQGAADA DGERFFFHRP ATRCWRKGGG AARAAGTGVW RPSGKETLVV  120
SPRCKRPVGT KRTLVFCPRR GGRGGARTDW AMHEYRLLPA GLNLHGCAAN APPPTNVSSL  180
AGGGAAADWV VCRIFRRARP AHRARLVGGR EEEEEHAAEE SPSSPSSCVT DASEAMDQEE  240
DDGDEGSSCS VASSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-252420317171NO APICAL MERISTEM PROTEIN
1ut4_B4e-252420317171NO APICAL MERISTEM PROTEIN
1ut7_A4e-252420317171NO APICAL MERISTEM PROTEIN
1ut7_B4e-252420317171NO APICAL MERISTEM PROTEIN
3swm_A4e-252420320174NAC domain-containing protein 19
3swm_B4e-252420320174NAC domain-containing protein 19
3swm_C4e-252420320174NAC domain-containing protein 19
3swm_D4e-252420320174NAC domain-containing protein 19
3swp_A4e-252420320174NAC domain-containing protein 19
3swp_B4e-252420320174NAC domain-containing protein 19
3swp_C4e-252420320174NAC domain-containing protein 19
3swp_D4e-252420320174NAC domain-containing protein 19
4dul_A4e-252420317171NAC domain-containing protein 19
4dul_B4e-252420317171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.117150.0callus| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G409800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686350.0BT068635.1 Zea mays full-length cDNA clone ZM_BFb0353I15 mRNA, complete cds.
GenBankEU9700760.0EU970076.1 Zea mays clone 339455 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456878.10.0NAC domain-containing protein 83
TrEMBLC5XGY20.0C5XGY2_SORBI; Uncharacterized protein
STRINGSb03g044440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Representative plantOGRP1730523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-31NAC domain containing protein 47