PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G417700.1.p
Common NameSb03g045130, SORBIDRAFT_03g045130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 147aa    MW: 16215 Da    PI: 7.561
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G417700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.61.1e-4515108295
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           r+++++lPianv+rimk +lP +akisk+aket+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++y
  Sobic.003G417700.1.p  15 RHDNNLLPIANVGRIMKDALPPQAKISKHAKETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADSMHRYLQRY 103
                           78899************************************************************************************ PP

                 NF-YB  91 releg 95 
                           re+e+
  Sobic.003G417700.1.p 104 RETEE 108
                           **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-428110IPR009072Histone-fold
SuperFamilySSF471136.71E-3317112IPR009072Histone-fold
PfamPF008082.3E-242184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-134866No hitNo description
PRINTSPR006152.3E-136785No hitNo description
PRINTSPR006152.3E-1386104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MASSSTTQDA NNGVRHDNNL LPIANVGRIM KDALPPQAKI SKHAKETIQE CATEFVGFVT  60
GEASERCRRE RRKTINGDDI CHAMRSLGLD HYADSMHRYL QRYRETEELA ATLNNGGGGR  120
DGRAIQIDVR AELSIFKGSN QQDGRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-3714105192Transcription factor HapC (Eurofung)
4g92_B3e-3714105192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G417700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459054.21e-106transcriptional activator hap3
SwissprotO040273e-41NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1W0W1A61e-105A0A1W0W1A6_SORBI; Uncharacterized protein
STRINGSb03g045130.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-43nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]