PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G423100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 233aa    MW: 25901.9 Da    PI: 7.9798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G423100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.42.1e-17271594128
                   NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..d 89 
                           Gf F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r +   + +  +r ++ sg W ++ +   
  Sobic.003G423100.2.p  27 GFDFDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYGL-RERGHFFVARGRGRGR-TAVRRaVAGSGAWMHSASklG 113
                           9**************************999**************855544.4566999999998765.555664788****96655235 PP

                   NAM  90 kevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                           ++v++ +  + + +  + fy       +g+ ++ +++ Wv++ey++
  Sobic.003G423100.2.p 114 QSVTDLGLVVRWSRVKFCFYvpqpgqeSGQGRQLRSAGWVLEEYQI 159
                           778887888999********9988877677777789********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2623185IPR003441NAC domain
PROSITE profilePS5100524.58424185IPR003441NAC domain
PfamPF023652.0E-1127159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEEDAANLSA GDGEEEEEAA ERGSGGGFDF DPTEDELVLH FLRPQLRGFP PRVAGAVLEA  60
DPCGAAPWEL LARYGLRERG HFFVARGRGR GRTAVRRAVA GSGAWMHSAS KLGQSVTDLG  120
LVVRWSRVKF CFYVPQPGQE SGQGRQLRSA GWVLEEYQIT DPRCYRRADD EEEDRYWVLC  180
RVRRSGDHGR RTESEAGAGM PPTSWNRSHS RLGVSRIFSS GFITKISRLF VR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G423100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-44HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313101.11e-149NAC domain-containing protein 48-like
TrEMBLA0A1B6Q8491e-166A0A1B6Q849_SORBI; Uncharacterized protein
STRINGSb03g045610.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Representative plantOGRP1441334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-09NAC domain containing protein 41