PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G423200.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 217aa MW: 24001.7 Da PI: 6.2942

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G423200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.4	8.8e-17	27	159	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkd 89 Gf F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ +++ +fF+ r + + +r + +g W at Sobic.003G423200.1.p 27 GFDFDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYGL-RERGHFFVARGRGRS---AVRRaVSGAGAWMrsATRLG 111 9************************999**********855544.456699999998654...56664667985467778 PP NAM 90 kevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 ++v++ + + + + + fy +g+ ++ +++ Wv++ey++ Sobic.003G423200.1.p 112 QSVTDLGVVVRWSRAKFCFYvpqpgqesgSGQGRQLRSAGWVLEEYQI 159 99999899999******999888776577777789******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.828	24	185	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-25	25	185	IPR003441	NAC domain
Pfam	PF02365	2.7E-11	27	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEQDAANLSA GAGEEEEEAA VRASGGGFDF DPTEDELVLH FLRPQLRGFP PRVAGAVLEA 60 DPCGAAPWEL LARYGLRERG HFFVARGRGR SAVRRAVSGA GAWMRSATRL GQSVTDLGVV 120 VRWSRAKFCF YVPQPGQESG SGQGRQLRSA GWVLEEYQIT DPRCYRRADE EEEDQYWILC 180 RVRRSGDHGR RTESEAGAGM PPTSWNKVME KEVNQK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G423200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-44	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311286.1	1e-151	NAC domain-containing protein 48
TrEMBL	A0A1W0W1F8	1e-155	A0A1W0W1F8_SORBI; Uncharacterized protein
STRING	Sb03g045610.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13761	25	28
Representative plant	OGRP14413	3	4

Link Out ? help Back to Top
Phytozome	Sobic.003G423200.1.p