PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G442100.1.p
Common NameSb03g047170, SORBIDRAFT_03g047170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 243aa    MW: 25809.7 Da    PI: 7.1327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G442100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-144496156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                          + y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+ +l+g+
  Sobic.003G442100.1.p 44 PVYRGVRARGGGTRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGA 96
                          68******999999****9999.....446*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-114495IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1645106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-2645106IPR001471AP2/ERF domain
SMARTSM003805.4E-2445110IPR001471AP2/ERF domain
PROSITE profilePS5103220.83745104IPR001471AP2/ERF domain
CDDcd000181.03E-2146106No hitNo description
PRINTSPR003671.4E-54657IPR001471AP2/ERF domain
PRINTSPR003671.4E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDADDSSSAS SSSPPVSPAD HHHHHSLPPK RRAGRKKFRE TRHPVYRGVR ARGGGTRWVC  60
EVREPQAQAR IWLGTYPTPE MAARAHDVAA IALRGATAAD LNFPDSAHAL PRARTAAPED  120
IRCAAAQAAE LYRPSSSSSS YSASSGLLQQ HARRTITPPP PEVSSACCWT TSTGTRSAGG  180
GGDSSTAASC YGFLDEDAIF DMPGLIDDMA RGMLLTPPAM GRGALLDDDH HSHVDCTLWM  240
VD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G442100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276711e-162KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457016.11e-175dehydration-responsive element-binding protein 1F
SwissprotA2WZI45e-80DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-80DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLC5XJC41e-174C5XJC4_SORBI; Uncharacterized protein
STRINGSb03g047170.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-41C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]