PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G000800.1.p
Common NameSb04g000270, SORBIDRAFT_04g000270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 212aa    MW: 22956.7 Da    PI: 8.5916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G000800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134971123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ F++   L  H+++H
  Sobic.004G000800.1.p 49 YPCSFCKREFRSAQALGGHMNVH 71
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.45E-64675No hitNo description
PfamPF139127.7E-74972IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0944976IPR007087Zinc finger, C2H2
SMARTSM003550.0074971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDEREESSKK QLQQGASSSS RQQQQQAPAA SSSWSYSSCS FFTWPPRSYP CSFCKREFRS  60
AQALGGHMNV HRRDRARLRH GGSPPPAPPP PPAMMMMTTI PNLNYPPPHQ CHLHRPSSSK  120
KLLLDRDGDN KRPSTSSMEL ELGVGVLVCS NCNTAAAATS TTPTAHAPAG GGPEDADGDD  180
LDLELRLGVS SSSFHRHTHT YKAGRCMICN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134471229superman protein
2l1o_A4e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G000800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314441.14e-82zinc finger protein 2
TrEMBLC5XRG51e-154C5XRG5_SORBI; Uncharacterized protein
STRINGSb04g000270.11e-145(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-21C2H2 family protein