PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G001100.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 211aa MW: 22639.1 Da PI: 9.8579

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G001100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.4e-15	133	182	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r+rr++kNRe+A rsR+R++a++ eLe + ++L eN++L+k+ +el+ Sobic.004G001100.1.p 133 SRRQRRMIKNRESAARSRARRQAYTNELELELAQLRRENEMLIKQHQELN 182 79******************************************999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-9	130	196	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	132	182	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	134	182	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-13	134	183	No hit	No description
Pfam	PF00170	7.5E-13	134	182	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	137	152	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEEVWKDYMS LQPSLISMTP AAGGGGALYS HRHHQHHLSP SGAGASHSPP SFSSPLQPPT 60 PTTTLSLSSN TLEFTYLGGA GAGAGSGGGG GSSTSGDDSR DLMVFSFAPA DQYQYQTMTK 120 QKQSISSAAA GDSRRQRRMI KNRESAARSR ARRQAYTNEL ELELAQLRRE NEMLIKQHQE 180 LNLRLAMSSS AQVPAHYSST SLQRCRSAPP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G001100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375836	4e-35	AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453116.2	1e-152	bZIP transcription factor 27
TrEMBL	C5XRG8	1e-151	C5XRG8_SORBI; Uncharacterized protein
STRING	Sb04g000300.1	1e-130	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14602	10	20
Representative plant	OGRP17801	2	2

Link Out ? help Back to Top
Phytozome	Sobic.004G001100.1.p