PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G026700.1.p
Common NameSb04g002360, SORBIDRAFT_04g002360
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 351aa    MW: 37338.6 Da    PI: 5.8014
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G026700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.51.1e-21251313163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  Sobic.004G026700.1.p 251 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAEALRSENSSLRAELERIRKEYEQLLSQN 313
                           89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.2E-28197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-21128233No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-16249312No hitNo description
SMARTSM003388.1E-21251315IPR004827Basic-leucine zipper domain
PfamPF001704.1E-20251313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265253316IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11254311No hitNo description
CDDcd147021.77E-24256306No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGSNDPSTPS KASKASEQDQ PPATTSSGTP SVYPEWPSFQ AYSAIPPHGF FPPTVAANPQ  60
AHPYMWGAQP MVPPYGTPPP PYVMYPPGTV YAHPSTPPTM HPFSHYPMPT NGHAETPGAA  120
PSAPEMNGKS EPGRTSAPSA NGITSHSESG SESESEGSDA NSQNDSHSKD NDGKEDGNSQ  180
NGISYSASQG MLNQTMAMLP VQPGAMVGGV PSSTANLNIG MDYWAASGSA AVPGTHGKAP  240
VGSARGDQWD ERELKKQKRK QSNRESARRS RLRKQAECEE LGQRAEALRS ENSSLRAELE  300
RIRKEYEQLL SQNASLKEKL GATSDSIPDM NEKNDGDGSY KRQHDSDAQS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G026700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282600.0KJ728260.1 Zea mays clone pUT6537 bZIP transcription factor (bZIP14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451464.10.0transcription factor HBP-1a
SwissprotP239221e-140HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLC5XTR70.0C5XTR7_SORBI; Uncharacterized protein
STRINGSb04g002360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-67basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]