PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G027800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

BES1

Protein Properties

Length: 716aa MW: 80409 Da PI: 7.933

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G027800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	158	6.7e-49	106	246	4	134
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssasas 89 g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl ++ g ++ as Sobic.004G027800.1.p 106 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSNQPLlppPPPQLHGVFQVAS 194 67899****************************************************************99988899****** PP DUF822 90 pesslq.sslkssalaspvesysaspksssfpspssldsislasa......a 134 +e++ ++l+s+ + +p++s+++ +++++++spsslds+ + + Sobic.004G027800.1.p 195 VETPALiNTLSSYVIGTPLDSQASALQTDDSLSPSSLDSVVADRSiktenyG 246 9999*****************************9876555544443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.5E-46	106	256	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	2.4E-171	275	709	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.16E-167	276	711	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	8.1E-83	298	670	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	313	327	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	334	352	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	356	377	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	449	471	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	522	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	556	572	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	573	584	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	591	614	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-53	629	651	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MRVAPFDLLL TAVIERPRGK MDPLRSRSNC SWKEPTPRRS AAACGCGHAV ARRSRPQIGA 60 GAGGWKRPRA MKHPPQRDGE PSPSPPPQRR PRGFASTAGG SPRRRGERER EREKERTKLR 120 ERHRRAITSR MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVQPDGTT FRSSNQPLLP 180 PPPPQLHGVF QVASVETPAL INTLSSYVIG TPLDSQASAL QTDDSLSPSS LDSVVADRSI 240 KTENYGNSSS VSSLNCMDND QLMRSAVLFP GDYTKTPYIP VYASLPMGII NSHCQLVDPE 300 SVRAELRHLK SLNVDGVVVD CWWGIVEAWT PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH 360 GSGEIGSGDV LISLPKWIME IAKENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV 420 YFDFMRSFHM EFRNLSEEGL VSSIEIGLGA SGELRYPSCP DTMGWKYPGI GEFQCYDRYM 480 QKHLRQSALS RGHLFWARGP DNAGYYNSRP HETGFFCDGG DYDSYYGRFF LNWYSGVLMD 540 HVDHVLSLAS LAFDGAEIVV KVPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVFRMLKK 600 HSVILKLVCY GPEFTIQEND EAFADPEGLT WQVMNAAWDH GLSLCVESAL PCHNGEMYSQ 660 ILDTAKPRND PDRHHAAFFA YRQQPPFLLQ REVCFSELCT FVKCMHGEAP HNGEG*

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MRVAPFDLLL TAVIERPRGK MDPLRSRSNC SWKEPTPRRS AAACGCGHAV ARRSRPQIGA  60
GAGGWKRPRA MKHPPQRDGE PSPSPPPQRR PRGFASTAGG SPRRRGERER EREKERTKLR  120
ERHRRAITSR MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVQPDGTT FRSSNQPLLP  180
PPPPQLHGVF QVASVETPAL INTLSSYVIG TPLDSQASAL QTDDSLSPSS LDSVVADRSI  240
KTENYGNSSS VSSLNCMDND QLMRSAVLFP GDYTKTPYIP VYASLPMGII NSHCQLVDPE  300
SVRAELRHLK SLNVDGVVVD CWWGIVEAWT PRKYEWSGYR DLFGIIKEFK LKVQVVLSFH  360
GSGEIGSGDV LISLPKWIME IAKENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV  420
YFDFMRSFHM EFRNLSEEGL VSSIEIGLGA SGELRYPSCP DTMGWKYPGI GEFQCYDRYM  480
QKHLRQSALS RGHLFWARGP DNAGYYNSRP HETGFFCDGG DYDSYYGRFF LNWYSGVLMD  540
HVDHVLSLAS LAFDGAEIVV KVPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVFRMLKK  600
HSVILKLVCY GPEFTIQEND EAFADPEGLT WQVMNAAWDH GLSLCVESAL PCHNGEMYSQ  660
ILDTAKPRND PDRHHAAFFA YRQQPPFLLQ REVCFSELCT FVKCMHGEAP HNGEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	278	708	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G027800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451472.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A194YMC5	0.0	A0A194YMC5_SORBI; Beta-amylase
STRING	Sb04g002450.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Sobic.004G027800.1.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]