PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G029651.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 708aa    MW: 82484.6 Da    PI: 7.8425
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G029651.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.6e-1911136190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................teker 52 
                           ++Yn+YAk++GFs+r+++s++s  ++e  k +fvC+keg+ ++++ +                                       k+r
  Sobic.004G029651.1.p  11 EYYNSYAKRTGFSIRTNTSRRSAITREKQKVQFVCNKEGFGRKRRVAaqlvdgitcysdndeaeeedtaqeeedeqvekskkfdGCKKR 99 
                           69****************************************999999******************************99999877888 PP

                  FAR1  53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           ++++   t+Cka+++vk    ++w+v+ +  eHnH+l+
  Sobic.004G029651.1.p 100 KREKMLYTNCKARMVVKII-GSRWQVIYFLAEHNHDLV 136
                           899999*************.9**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1711136IPR004330FAR1 DNA binding domain
PfamPF105519.0E-31259352IPR018289MULE transposase domain
PROSITE profilePS509669.371541577IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-4549573IPR007527Zinc finger, SWIM-type
SMARTSM005750.0026552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MSFATLDEAR EYYNSYAKRT GFSIRTNTSR RSAITREKQK VQFVCNKEGF GRKRRVAAQL  60
VDGITCYSDN DEAEEEDTAQ EEEDEQVEKS KKFDGCKKRK REKMLYTNCK ARMVVKIIGS  120
RWQVIYFLAE HNHDLVVQPS LKKFLRSHRG IPKQEKDFIV LLHGCNLSTG RIMQLMSEFY  180
GSAQLVPYDG KQVSNFRSTI HKTEKFKDMQ ETLDYFRALK EEDPEFFYKI KLDDNHRVEN  240
LFWVDSAARR AYKEAYNDCV SFDATYMTNI YEMPCTPFIG INRHCQTFQL GCAFIRNEKT  300
ATYEWLFLTF LEAMDRKAPL NIITDQDPAM RAAICIVFPN TTHRNCRWHI MDKFSGTIGP  360
ILAKNDELNE EFVDCLNHTV SPEDFESKWS TMVQKYGLED NEHFQHLYHI RQSFIPAYYM  420
HSFFPFLQST QRSEGFNALL KKYVNPNLSV LQFVRQYQKI QEKCLVAQDG QDFRTDENER  480
RRWSRHPLEK HASTVYTKNM FYRFSKEFEK TAEYDVKPVG QFQYWLEPNN SFVFGYGKRN  540
YLVTAIEEDE SYCCECSKFD RDGIICCHIM RVMVRMGVKL IPERYILKRW TQQAIASDTN  600
QVQNVNAPVG LVARGMPLTS EKTLRLTNAT TAFAAIAVEG CTNDENYAIL EKHIKEMRSE  660
FEEIKKRMMA NRQNTSGTES GATEGAENGT DVSTLTRPSL QTAGLKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G029651.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5RL590.0A0A1Z5RL59_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1361125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-94FAR1-related sequence 5