PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G036500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 391aa    MW: 43130.7 Da    PI: 9.0213
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G036500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.59.6e-31218272155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprlrWt eLHe Fv+ v++LGG+ekAtPk +l+l+kv+gLt++hvkSHLQkYR 
  Sobic.004G036500.2.p 218 KPRLRWTLELHELFVKSVNKLGGPEKATPKGVLKLVKVEGLTIYHVKSHLQKYRF 272
                           79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.233215275IPR017930Myb domain
SuperFamilySSF466892.15E-15216272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27217273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22218272IPR006447Myb domain, plants
PfamPF002491.1E-7220271IPR001005SANT/Myb domain
PfamPF143799.0E-22308352IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MTKETNSLNL KAVKQFTSPG RMAHTRTAPQ PSAHQLLSAP HDLLPSSSCA ASQSSKILPF  60
DLQKCSPDST NGTPVSRVSQ AGLLSKDLVS PSSSSTFCTS MYSSSSTNSK SCRQADALPF  120
LPHPPKSEHQ QTSGGGSFHG ESNGMAFREQ MEFQFLSEQL GIAITDNEES PRLDDIYDRP  180
PQTSSCPVLS CSDQDDLQRT GSPVKVQLSS SRAASCNKPR LRWTLELHEL FVKSVNKLGG  240
PEKATPKGVL KLVKVEGLTI YHVKSHLQKY RFAKHLPETK EDMKFSSEDK ISKSEIPGNN  300
AGRKKSLQLA EALRMQMEVQ KQLHEQLEVQ RQLQVRIEEH AKYLQKILEQ QKASNSLPAM  360
TSSIERELSE SKEEKKPKTQ ADTFSAPLPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23218275259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}.
UniprotTISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G036500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383170.0BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBankEU9545900.0EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBankJX4699780.0JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453279.20.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ41e-140PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A1Z5RL760.0A0A1Z5RL76_SORBI; Uncharacterized protein
STRINGSb04g003140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.27e-69G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]