PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G041600.1.p
Common NameSb04g003610, SORBIDRAFT_04g003610
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 260aa    MW: 27265.3 Da    PI: 9.6676
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G041600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18132186256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++t+ q + Le+ F+ ++ +s+ e++eL++++gL+ rqV vWFqNrRa+ k
  Sobic.004G041600.1.p 132 RKKLRLTAAQATMLEDSFRAHNILSHGEKQELSRRVGLSARQVEVWFQNRRARTK 186
                           678899***********************************************98 PP
2HD-ZIP_I/II110.79.7e-36132221190
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl++ q+++LE+sF++++ L++ +K+el+r++gl++rqv+vWFqnrRARtk+kq+E+d++ L+r++d+l+++n+rL+++ ++Lr+
  Sobic.004G041600.1.p 132 RKKLRLTAAQATMLEDSFRAHNILSHGEKQELSRRVGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCDRLTDDNARLRRDLADLRR 220
                           69************************************************************************************996 PP

           HD-ZIP_I/II  90 e 90 
                           +
  Sobic.004G041600.1.p 221 A 221
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.601128188IPR001356Homeobox domain
SuperFamilySSF466897.7E-18130197IPR009057Homeodomain-like
SMARTSM003897.5E-14130192IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-17132186IPR009057Homeodomain-like
CDDcd000862.26E-11132189No hitNo description
PfamPF000461.2E-15132186IPR001356Homeobox domain
PRINTSPR000311.3E-5159168IPR000047Helix-turn-helix motif
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5168184IPR000047Helix-turn-helix motif
SMARTSM003403.7E-12188231IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-7188219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSSLTTAGSS MEEQYYSVSV SVSMSPEEVG THLSLGIGSG GGGGEARSLR LAPPPPTRTV  60
QLFGEVLSVQ DDDRDGDEAQ ALHHHQRGRP TAASRKKKRD AAAAGGGTAA AADSHQSKKA  120
KSTCGDDGGG GRKKLRLTAA QATMLEDSFR AHNILSHGEK QELSRRVGLS ARQVEVWFQN  180
RRARTKLKQT EVDCDLLRRW CDRLTDDNAR LRRDLADLRR AAASTSLGAG AAVCASCGGG  240
TDDKRQPAGA AAAGGNMLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G041600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054124e-51AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13.
GenBankAP0149584e-51AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-51CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451550.10.0putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX65e-50HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLC5XUP40.0C5XUP4_SORBI; Uncharacterized protein
STRINGSb04g003610.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Representative plantOGRP1970022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-22homeobox protein 2