PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G051900.1.p
Common NameSb04g004430, SORBIDRAFT_04g004430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 912aa    MW: 100418 Da    PI: 5.6571
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G051900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24134235199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
  Sobic.004G051900.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIATDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 220
                           99*****************************8444443..48*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++ +l+++++r+
  Sobic.004G051900.1.p 221 I--WNDNNQLLLGIRRA 235
                           *..7777778***9997 PP
2Auxin_resp119.33.1e-39260343183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sobic.004G051900.1.p 260 AAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-22133234No hitNo description
SMARTSM010192.0E-25134236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31134236IPR003340B3 DNA binding domain
PfamPF023621.6E-22134235IPR003340B3 DNA binding domain
PfamPF065075.4E-34260343IPR010525Auxin response factor
SuperFamilySSF542772.35E-8769855No hitNo description
PfamPF023093.5E-8770864IPR033389AUX/IAA domain
PROSITE profilePS5174525.128779863IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MKLSPSASGG LQDQPGSPEE AEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV  60
AASTNKEMEA QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIATDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPMAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT SSLMWLRDRA NPGFQSLNFS  420
GLGTSPWMQP RLDNSLLGLQ SDMYQTIAAA AALQSTTKQV SPSVMQFQQP QNIVDRSALL  480
SSQILQQVQP QFQQIYPQNL NENKIQGQTE YLQQQLQRCQ SFNEQKPPLH SQQQEQESQQ  540
QQCVQTPQDQ QMQQQKHLHN FHSLPDALSA FSQLSSATHS PSSTLQTVPA FSHQQNFPDT  600
NISSLSPSSG SSMHGMLGQL PSEAASSLPC VAINTPVSVS DPWSSKRVAV ESVNPSRPHV  660
VSPQIEQLDM ASCNMPQSSA LAPLPGRECL VDQDGNSDPQ NHLLFGVNID SQSLLMQGGI  720
PSLQNDNSSG TIPYSTSNFL SSSQNDFPLN QSLHSAGCLD ESGYAPCAEN SEQANQQFAT  780
FVKVYKSGNV GRLLDITRFS SYDELRSEVG RLFGLEGQLE DPLRSGWQLV FVDREDDVLL  840
VGDDPWQEFV NSVSCIKILS PEEVQQMGKP GIQLLSSAPS RRLSNGCDSY ASMQESRSLS  900
TGMAPVGSVE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601136440388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207200.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G051900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277400.0KJ727740.1 Zea mays clone pUT5681 ARF transcription factor (ARF16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315058.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLC5XVH80.0C5XVH8_SORBI; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]