PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G051900.3.p
Common NameSb04g004430, SORBIDRAFT_04g004430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 845aa    MW: 93419.8 Da    PI: 5.787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G051900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-2467168199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
  Sobic.004G051900.3.p  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIATDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 153
                           99*****************************8444443..48*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++ +l+++++r+
  Sobic.004G051900.3.p 154 I--WNDNNQLLLGIRRA 168
                           *..7777778***9997 PP
2Auxin_resp119.42.8e-39193276183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sobic.004G051900.3.p 193 AAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 276
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-4852196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-4359182IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-2266167No hitNo description
PfamPF023621.5E-2267168IPR003340B3 DNA binding domain
SMARTSM010192.0E-2567169IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3167169IPR003340B3 DNA binding domain
PfamPF065074.9E-34193276IPR010525Auxin response factor
SuperFamilySSF542771.57E-8702788No hitNo description
PfamPF023093.1E-8703797IPR033389AUX/IAA domain
PROSITE profilePS5174525.128712796IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MEAQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGTAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFNQ QPPAQELIAT DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR PQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPCEFVIPM AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  300
TFPMYPSPFA LGLKRPWPTG LPSLYGGRDD GLTSSLMWLR DRANPGFQSL NFSGLGTSPW  360
MQPRLDNSLL GLQSDMYQTI AAAAALQSTT KQVSPSVMQF QQPQNIVDRS ALLSSQILQQ  420
VQPQFQQIYP QNLNENKIQG QTEYLQQQLQ RCQSFNEQKP PLHSQQQEQE SQQQQCVQTP  480
QDQQMQQQKH LHNFHSLPDA LSAFSQLSSA THSPSSTLQT VPAFSHQQNF PDTNISSLSP  540
SSGSSMHGML GQLPSEAASS LPCVAINTPV SVSDPWSSKR VAVESVNPSR PHVVSPQIEQ  600
LDMASCNMPQ SSALAPLPGR ECLVDQDGNS DPQNHLLFGV NIDSQSLLMQ GGIPSLQNDN  660
SSGTIPYSTS NFLSSSQNDF PLNQSLHSAG CLDESGYAPC AENSEQANQQ FATFVKVYKS  720
GNVGRLLDIT RFSSYDELRS EVGRLFGLEG QLEDPLRSGW QLVFVDREDD VLLVGDDPWQ  780
EFVNSVSCIK ILSPEEVQQM GKPGIQLLSS APSRRLSNGC DSYASMQESR SLSTGMAPVG  840
SVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-136329794388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207200.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G051900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277400.0KJ727740.1 Zea mays clone pUT5681 ARF transcription factor (ARF16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315059.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1Z5RL730.0A0A1Z5RL73_SORBI; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]