PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G059100.1.p
Common NameSb04g004960, SORBIDRAFT_04g004960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 387aa    MW: 40862.6 Da    PI: 4.1157
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G059100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.1e-1068152170
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekk 70 
                           +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++               r  g +r++ +C+ +we l+ +y +++++e +
  Sobic.004G059100.1.p  68 EWTAAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaaseafasgprtrrgRGSGSKRTAGECRRRWEALAAEYGAVRRWEVR 152
                           5**************************************************99999**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.56269140IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDPTAADQPC VIQALPANCN TLPPPPPLVQ ALAAQHSPAK TNPPSSPAAK RRPAPPSPRR  60
TRSGGAPEWT AAETLALVAE VAAVDDGWSR SVSAFQKWAM VAENLAASEA FASGPRTRRG  120
RGSGSKRTAG ECRRRWEALA AEYGAVRRWE VRTGGTYWEM GAAARRKAGL PAEFDAEVYG  180
AMDALIRVEE ALLADAAGAG AGGEEMEGLV GGGAAVEVGE QDGGDSGEAE VGKEQVQVQE  240
DASAGEEEEE PQEEKEEEEE EEEEEDVDED GEEMQEDGGN AGASNDLEGH ETGASIEPEK  300
SQNIAWELAN KLHENAQHIH TILNEEAAQD GGQNHALGGL MLPDAMEATR KKADELIKSL  360
GGLVSYLNQF TELVKETGFE NIAGMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G059100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341130.0BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds.
GenBankBT0857100.0BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds.
GenBankEU9699570.0EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451634.20.0trihelix transcription factor ASR3
TrEMBLA0A194YMX70.0A0A194YMX7_SORBI; Uncharacterized protein
STRINGSb04g004960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Representative plantOGRP74821314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-14sequence-specific DNA binding transcription factors