PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G059900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 321aa    MW: 34012.8 Da    PI: 5.3873
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G059900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.5e-17144196358
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                           ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Sobic.004G059900.1.p 144 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 196
                           68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-18142206IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185144196IPR004827Basic-leucine zipper domain
PfamPF001703.2E-14145194IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-13145197No hitNo description
Gene3DG3DSA:1.20.5.1705.3E-13146197No hitNo description
CDDcd147028.60E-23147197No hitNo description
PROSITE patternPS000360149164IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKKCPSELEL EAFLRGREDA TAAAAAAVAE QKPVHDVAAL APFGAGGVFP PSDLSAFSFA  60
DSNTLNGSIH NHLWSHNHNV RHPAVSTTIE SQSSICAAAS PTSATNLYLK ESQTLGGTSG  120
SDSDSESLLD IEGGPCEQST NPQDVKRMRR MVSNRESARR SRKRKQAHLA DLETQVDQLR  180
GENASLFKQL TDANQQFTTA VTDNRILKSD VEALRVKVKL AEDMVARGAL SCGLGSLGLS  240
PVLNPRQACR GPDVLSGLDF PGDDACFTGL SATEQLQNSP LQSIASLESL ENRMASEVTS  300
CGGPGVDVWP WDHSNGGLSK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRSRKRK
2158165RRSRKRKQ
3160165SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.69130.0leaf| ovary
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G059900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.10.0basic leucine zipper 9-like isoform X1
SwissprotQ6H5001e-139RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A194YMZ40.0A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]