PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G062100.1.p
Common NameSb04g005180, SORBIDRAFT_04g005180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 446aa    MW: 46454.3 Da    PI: 7.9414
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.16.9e-40205279276
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           Cq+egC+adls ak+yhrrhkvCe h+ka +v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+
  Sobic.004G062100.1.p 205 CQAEGCKADLSAAKHYHRRHKVCEYHAKAGSVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 279
                           *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33197266IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.906202279IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-37203280IPR004333Transcription factor, SBP-box
PfamPF031102.3E-30205278IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSPTSTTDVD FSFGPMQSYV GFDAGGMAMP GVIERPLLQN HHHNNNHNLG VYDSFDFAAA  60
AGLPFQESGL LPPTSSMPLM APPTTSMAAM AAMPPSLLLT LPGVPTAADV VYPFGGGGAG  120
GGFLKREDGC GGGPLVDAGG SGGRIGLNLG RRTYFSPADV LAVDRLLTRS RLGGGVGVGM  180
GMGLGMGVLG LGLGAAHHHH QPPKCQAEGC KADLSAAKHY HRRHKVCEYH AKAGSVAAAG  240
KQQRFCQQCS RFHVLAEFDE AKRSCRKRLT EHNRRRRKPI SAQGKDSSPP PPPPKKADTC  300
ITTSYSNDLK TGASNTAAAK STAISPNGSG VSCLDVMDNG QTSSAAAAVV APTALSLAAT  360
PPPLHEKDGS LDSMLLMQRL QGRRDNDDDE EHRHFITSLV MQTQQQQQQH SGGGAGAGNI  420
LSCSSVSDQQ QNGGGCNGFF EVDFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-292052781184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261278KRSCRKRLTEHNRRRRKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G062100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451645.20.0squamosa promoter-binding-like protein 5
SwissprotQ0E3F84e-73SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A1Z5RL610.0A0A1Z5RL61_SORBI; Uncharacterized protein
STRINGSb04g005180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-39squamosa promoter binding protein-like 8