PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G078100.1.p
Common NameSb04g006450, SORBIDRAFT_04g006450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 296aa    MW: 30685.7 Da    PI: 10.1191
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G078100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-0896121227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ +     Ck Gd+C+FaHg+
  Sobic.004G078100.1.p  96 KTRLCNKYNTAEGCKWGDKCHFAHGE 121
                           8***********************96 PP
2zf-CCCH34.63.1e-11261285126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+ C +fa+ G C++Gd+C+FaHg
  Sobic.004G078100.1.p 261 FKTKMCENFAK-GSCSFGDKCHFAHG 285
                           69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.13461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0333462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-73659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1491127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-893125IPR000571Zinc finger, CCCH-type
SMARTSM003560.06994121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.95394122IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-596121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.42E-13157235IPR004088K Homology domain, type 1
SMARTSM003224.1E-9164234IPR004087K Homology domain
PROSITE profilePS5008414.571165229IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.4E-14165233IPR004088K Homology domain, type 1
CDDcd001059.51E-13167229No hitNo description
PfamPF000133.1E-10167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16257292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-9259291IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-7260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934260287IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-8261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDGGRKRGKA DGAKGASAGA KRSRESESFQ SGVGSKSKPC TNFFSTSGCP FGEGCHFLHY  60
FPGGYQAVSK MTNLGGTTIA SPGRMTMDGP PTPTVKTRLC NKYNTAEGCK WGDKCHFAHG  120
EKELGKPKLM GSYMPPPMGP RPTGHFAPPP MASPGLATPA SFGASATAKI SVDASLAGGI  180
IGRGGVNTKQ ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIRNASAMVS ELIVSISGNA  240
PPQAKNPAGG THRGGRTGSN FKTKMCENFA KGSCSFGDKC HFAHGDNELR KPAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139GRKRGKA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G078100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451712.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-168C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLC5XXF80.0C5XXF8_SORBI; Uncharacterized protein
STRINGSb04g006450.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-71C3H family protein