PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G078100.2.p
Common NameSb04g006450, SORBIDRAFT_04g006450
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 226aa    MW: 23407.6 Da    PI: 9.9971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G078100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-082651227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+lC+ +     Ck Gd+C+FaHg+
  Sobic.004G078100.2.p 26 KTRLCNKYNTAEGCKWGDKCHFAHGE 51
                          8***********************96 PP
2zf-CCCH35.22.2e-11191215126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+ C +fa+ G C++Gd+C+FaHg
  Sobic.004G078100.2.p 191 FKTKMCENFAK-GSCSFGDKCHFAHG 215
                           69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-142157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-82355IPR000571Zinc finger, CCCH-type
SMARTSM003560.0692451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9532452IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-52651IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.6E-1487165IPR004088K Homology domain, type 1
SMARTSM003224.1E-994164IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.8E-1495163IPR004088K Homology domain, type 1
PROSITE profilePS5008414.57195159IPR004088K Homology domain, type 1
PfamPF000131.9E-1097161IPR004088K Homology domain, type 1
CDDcd001053.13E-1397159No hitNo description
Gene3DG3DSA:4.10.1000.108.6E-17187222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9189221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934190217IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-7190216IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8191215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTNLGGTTIA SPGRMTMDGP PTPTVKTRLC NKYNTAEGCK WGDKCHFAHG EKELGKPKLM  60
GSYMPPPMGP RPTGHFAPPP MASPGLATPA SFGASATAKI SVDASLAGGI IGRGGVNTKQ  120
ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIRNASAMVS ELIVSISGNA PPQAKNPAGG  180
THRGGRTGSN FKTKMCENFA KGSCSFGDKC HFAHGDNELR KPAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G078100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451712.11e-165zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-124C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A194YNB71e-164A0A194YNB7_SORBI; Uncharacterized protein
TrEMBLC5XXF81e-163C5XXF8_SORBI; Uncharacterized protein
STRINGSb04g006450.11e-164(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-53C3H family protein