PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G078800.1.p
Common NameSb04g006500, SORBIDRAFT_04g006500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 489aa    MW: 52353.7 Da    PI: 8.7138
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G078800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11163199339
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                           + k  rr+++NReAAr+sR+RKka+i++Le+    L+
  Sobic.004G078800.1.p 163 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLT 199
                           67999*************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-5161224IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.864163205IPR004827Basic-leucine zipper domain
PfamPF001708.6E-9164205IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-7165207No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-7166205No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
PfamPF141443.0E-27250334IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGDRTWQQPH EQPQAYPDAG TMVQASSSSV HGSIIRKEPG GGYDMAEFDQ ALFLYLNSQD  60
QASVIQDQPQ TLNIFPSQPM HVVEPAPKGG SMGTNNTASN AAAVAGSSSK QQQQPPPPPP  120
PPNKDGGKPA AVKREGSGGG AAMGSGTPST SNNRQEGRPR TSDAKTLRRL AQNREAARKS  180
RLRKKAYIQN LETSRIRLTQ LEQDLHYRSR TQGAVFGGGA LSGCSGGLSP EAAWFDMEHA  240
RWQEEHGKMM RHLRAALEAE HAASAASTST AAEAQLLRQL VDAAAAHHGV LAELKAVAAR  300
ADAFHLVSGA WASAAERCFL WIGGFRPSEL IKIAARHAEP LTEQQAMGVC GVQQWARDAE  360
AALDHELQAM HRSVSEAVSS DAAALLCPYS DVPGFMATMS LAISKLASLE AFVRQADALR  420
LQALHRLPQI LTARQSARCF LAIADYSHRL RALSELWHTR PGQDPAASNL AAGPSSQRPP  480
YQSRDGLL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G078800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513161e-83EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315878.10.0transcription factor TGAL9 isoform X2
SwissprotQ52MZ21e-137TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A194YNC10.0A0A194YNC1_SORBI; Uncharacterized protein
STRINGSb04g006500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1445244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-100bZIP family protein