PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G078800.2.p
Common NameSb04g006500, SORBIDRAFT_04g006500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 488aa    MW: 52197.5 Da    PI: 8.4904
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G078800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11162198339
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                           + k  rr+++NReAAr+sR+RKka+i++Le+    L+
  Sobic.004G078800.2.p 162 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLT 198
                           67999*************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-5160223IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.864162204IPR004827Basic-leucine zipper domain
PfamPF001708.6E-9163204IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-7164206No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-7165204No hitNo description
PROSITE patternPS000360167182IPR004827Basic-leucine zipper domain
PfamPF141443.0E-27249333IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGDRTWQQPH EQPQAYPDAG TMVQASSSSV HGSIIKEPGG GYDMAEFDQA LFLYLNSQDQ  60
ASVIQDQPQT LNIFPSQPMH VVEPAPKGGS MGTNNTASNA AAVAGSSSKQ QQQPPPPPPP  120
PNKDGGKPAA VKREGSGGGA AMGSGTPSTS NNRQEGRPRT SDAKTLRRLA QNREAARKSR  180
LRKKAYIQNL ETSRIRLTQL EQDLHYRSRT QGAVFGGGAL SGCSGGLSPE AAWFDMEHAR  240
WQEEHGKMMR HLRAALEAEH AASAASTSTA AEAQLLRQLV DAAAAHHGVL AELKAVAARA  300
DAFHLVSGAW ASAAERCFLW IGGFRPSELI KIAARHAEPL TEQQAMGVCG VQQWARDAEA  360
ALDHELQAMH RSVSEAVSSD AAALLCPYSD VPGFMATMSL AISKLASLEA FVRQADALRL  420
QALHRLPQIL TARQSARCFL AIADYSHRLR ALSELWHTRP GQDPAASNLA AGPSSQRPPY  480
QSRDGLL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G078800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513161e-83EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315879.10.0transcription factor TGAL9 isoform X3
SwissprotQ52MZ21e-136TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1Z5RLE70.0A0A1Z5RLE7_SORBI; Uncharacterized protein
STRINGSb04g006500.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.13e-99bZIP family protein