PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G101000.1.p
Common NameSb04g008260, SORBIDRAFT_04g008260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 201aa    MW: 21045.6 Da    PI: 10.9184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G101000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-072784653
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-.STCHHHHHHHHHHHHH CS
                   HLH  6 nerErrRRdriNsafeeLrellPk.as........kapskK.lsKaeiLekAveYIks 53
                          + +Er+RR+++N  +++L +l+   +s         ++++  ++  + Le+A  YI++
  Sobic.004G101000.1.p 27 KTVERNRRNQMNALYSRLDSLVRAgSSpsssaaaaVQRGPPaMTRPDRLEEAAAYIRQ 84
                          679*********************766*******97777777**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5052185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-825105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.04E-727107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-52884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEMPPPPPPP PFGGQAAGRG GNKPDRKTVE RNRRNQMNAL YSRLDSLVRA GSSPSSSAAA  60
AVQRGPPAMT RPDRLEEAAA YIRQTTERVE RLKERKRELL TSARASSSQG SGSGSGAAAE  120
VEVQHLGSGL HAILVTGAPP SEGASFHRAV RAVEEAGGEV QNAHFSVVGA RAIYTIHTLV  180
AEGGIERVVQ RLKAALRGDA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G101000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451822.11e-140transcription factor bHLH162
TrEMBLC5XYJ91e-138C5XYJ9_SORBI; Uncharacterized protein
STRINGSb04g008260.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Representative plantOGRP1445944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-12bHLH family protein