PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G102500.1.p
Common NameSb04g008380, SORBIDRAFT_04g008380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 400aa    MW: 40785.1 Da    PI: 10.6248
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G102500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221394.5e-4334122286
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssa 86 
                           ++ r p+w+ErEnn++RER RR ia +i+aGLR +Gny+lp ++Dnn+Vl ALc+eAGw+ve+DGttyrkg kp     ++++ +g sa
  Sobic.004G102500.1.p  34 AAVRAPSWRERENNRQRERCRRVIARRIFAGLRLYGNYALPRHCDNNNVLMALCEEAGWTVEADGTTYRKGPKPDragdQHMADIGGSA 122
                           789***********************************************************************965544455555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.1E-4136117IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKGGGVGAAG GSSGGDEAWA RAAGDGDGDG KQAAAVRAPS WRERENNRQR ERCRRVIARR  60
IFAGLRLYGN YALPRHCDNN NVLMALCEEA GWTVEADGTT YRKGPKPDRA GDQHMADIGG  120
SAPAPVKNPG GASYSLTRAS SPSGIMLGGG GSGGSSDPIP AWLKNQSKQL SDNSYPNFFA  180
SSSNSKAPAT PQDGSAPSSP LRLRKMSRYS SPPPSSARAS ASNSNVLPPP PWATGAGASR  240
FSFQTSTPPL MSTVNGRTPG PDPVSLLAGF QISNAAANKQ AAAYSSSFVA SGASSLGAGS  300
SASGSGWKPW MLPPLPGRSR SGASAAIRGR GGALMSGRGG ALMSGRGGAL LSPLGFSFRR  360
SGGEQAGARE EDVMTEKNAD EEDGLELTLG NAATRKDRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-1837107372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-1837107372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-1837107372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-1837107372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G102500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849388e-38KF184938.1 Saccharum hybrid cultivar R570 clone BAC 176L06 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453576.10.0protein BZR1 homolog 4
TrEMBLA0A1Z5RM890.0A0A1Z5RM89_SORBI; Uncharacterized protein
STRINGSb04g008380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2780224
Representative plantOGRP1370724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18890.13e-20BES1/BZR1 homolog 3