PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G107900.1.p
Common NameSb04g008840, SORBIDRAFT_04g008840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 260aa    MW: 27490.8 Da    PI: 6.0453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G107900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.3e-11130176551
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                           kr +r   NR +A+rsR RK+++i eLe+ v +L+ e +aL  ++  
  Sobic.004G107900.1.p 130 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQMEVSALSPRVAF 176
                           899**********************************9999877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-13126190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.634128184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-14130184No hitNo description
PfamPF001701.5E-9130178IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-11130184No hitNo description
CDDcd147036.91E-22131181No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAQLPPRAPS ALPQDHWSAA GAEFLGFAAA RRGAHRRSAS DSAAFLEVVP MDDVIGGGGS  60
GSAGDDFDRL DDEQLMSMFS DVDAPAVSDG AGERAGDAAQ LMDVGDAEDG MAASSPAGAR  120
AAADGVADPK RVKRILANRQ SAQRSRVRKL QYISELERSV TSLQMEVSAL SPRVAFLDHQ  180
RSLLTVGNSH LKQRIAALAQ DKIFKDAHQE ALKKEIERLR QVYQQQQIKV ATTGGADIAA  240
AASMQARQEL LACEGAAIR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and shoots. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G107900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687451e-151EU968745.1 Zea mays clone 323889 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451860.10.0basic leucine zipper 19
SwissprotQ6K3R91e-106BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLC5XZ100.0C5XZ10_SORBI; Uncharacterized protein
STRINGSb04g008840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-54bZIP family protein