PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G158300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 350aa    MW: 37496.6 Da    PI: 4.9153
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.7e-2632137186
              trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                           rWt+qe+l+Lie++r +e r +rg                        + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike
  Sobic.004G158300.1.p  32 RWTRQEILVLIEGKRMVEGRGGRGGrgrvaaaaaaasgsgeasasasaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKE 120
                           8**************99999999755677788888889999999998788*************************************** PP

              trihelix  67 gekkrtsessstcpyfdqle 86 
                           +e+     + s+ p f  ++
  Sobic.004G158300.1.p 121 WERAA---AASREPSFWAMR 137
                           ***86...333557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-53244IPR009057Homeodomain-like
PfamPF138374.1E-1033136No hitNo description
Gene3DG3DSA:1.10.10.607.3E-577111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSTAGDPAGA AAAAAAAAAA ATPSGRAPRL PRWTRQEILV LIEGKRMVEG RGGRGGRGRV  60
AAAAAAASGS GEASASASAA LEPKWAAVAE YCRRHGVERG PVQCRKRWSN LAGDYKKIKE  120
WERAAAASRE PSFWAMRNDA RRERRLPGFF DREVYDILEG RGRAILDDRS ARNAAAEELV  180
LVRVEEGKEA EVPEAVFDSG RPATEEALFS EDEEEEEEDA PAVAPPPPPP PVIAVPVSEK  240
PEASRQQQSA EQGTTKDTQP EQSSERDAPA QQGGQKRPRT DEGAGEGTAD LQSKLIEILD  300
RNSRLVAAQL EAQNQNCELD REQRKDQANS LVLVLGRLAD ALGRIADKL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G158300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683320.0BT068332.1 Zea mays full-length cDNA clone ZM_BFb0102G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316288.10.0trihelix transcription factor ASR3
TrEMBLA0A194YPY40.0A0A194YPY4_SORBI; Uncharacterized protein
STRINGGRMZM2G162840_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-71Trihelix family protein