PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G163200.1.p
Common NameSb04g021490, SORBIDRAFT_04g021490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 497aa    MW: 54776.3 Da    PI: 4.6862
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34671592103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++
  Sobic.004G163200.1.p  67 FLSKTYDLVSEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDS 146
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i r++s+
  Sobic.004G163200.1.p 147 KHLLKRIVRRRSS 159
                           *********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3763156IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.56E-3363156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-5563156IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.6E-3167156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-166790IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16105117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340106130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16118130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDRARPTAAA AMLLEPKLED EDVPPLLQQL ASPGPPFVSL DQLMPAPAAE PPRPLEALLQ  60
GPQLPPFLSK TYDLVSEPAL DGVISWGAAG NSFVVWDPST FARDVLPHNF KHNNFSSFVR  120
QLNTYGFRKV HADRWEFAHE DFLRDSKHLL KRIVRRRSSP TKQSSIQPGS SSGESILDPE  180
LHTLRREKNT LLEEVARLKQ EHRQTIEHMS TLNHRLESAE DRQRQMVSFL AKLLQNPSFV  240
RQLKLHREKK EIDSTRVKRK FLKHVPHSIE SGESSSQHAG ESGSHFAVSS SMATSLHDDI  300
TELQNFLLED DDVNFGMGSE NMGLEGIDAP EDIGELIQGF DTQEELELGS GAELLEMPPA  360
SGPLGQDPTI GRSKGKNVLC PGLDATSSEA DCLSPLSDNM GLLSGTMLGA AGRMMDADDQ  420
QVWGVDASAA LQSSCSGTSQ QAFSSHASDP YLMDIANKPE RFWELDFQAL DETDLQLDKC  480
AIDDPALQQQ PSMEKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-245915911123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G163200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571670.0EU957167.1 Zea mays clone 1584568 heat shock factor protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453922.10.0heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLC5XTC90.0C5XTC9_SORBI; Uncharacterized protein
STRINGSb04g021490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-69heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]