PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G171300.1.p
Common NameSb04g022245, SORBIDRAFT_04g022245
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 279aa    MW: 29225.3 Da    PI: 10.1587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G171300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20129177355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++aa+++++g
  Sobic.004G171300.1.p 129 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFVTPEDAARAYDAAALRIRG 177
                           9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.08128185IPR001471AP2/ERF domain
SMARTSM003803.0E-37128191IPR001471AP2/ERF domain
PfamPF008474.4E-14128177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32128186IPR001471AP2/ERF domain
CDDcd000182.63E-21129187No hitNo description
SuperFamilySSF541713.14E-22129186IPR016177DNA-binding domain
PRINTSPR003675.5E-14129140IPR001471AP2/ERF domain
PRINTSPR003675.5E-14167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRPPPPCPPA PTAAALREAM ETAAIVAALT HVIAGGRAET LTQTPPPPCP WASLGYRCHH  60
ENVGPASCQG ETGTTSPPPA NMVSGTSVRF PAPAPVASPG WWMLTCFSIF AVERRVAPAP  120
PPPPSQRSYR GVRRRPWGKW AAEIRDPKKA ARVWLGTFVT PEDAARAYDA AALRIRGSRA  180
KLNFPEDASS LRRRPPVAVG SSPQSRSRLD LDLDGTATTG RSPSCLEMMY AGTGTDAFMV  240
GGGNNGRFLG SWSIGTSSPS HKPVCSSAPV VVAPAAAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23127190468ATERF1
3gcc_A4e-23127190468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G171300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056114e-51AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149584e-51AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453961.20.0ethylene-responsive transcription factor ABR1
TrEMBLA0A194YQ520.0A0A194YQ52_SORBI; Uncharacterized protein
STRINGSb04g022245.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-24ERF family protein