PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G173300.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 718aa    MW: 81276.6 Da    PI: 6.8015
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G173300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-2293179290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Sobic.004G173300.5.p  93 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DTNFNDPHTRTNCRAMVRFRVNDQGEWKVIRLVSDHNHNLA 179
                           7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1993179IPR004330FAR1 DNA binding domain
PfamPF105513.1E-26300394IPR018289MULE transposase domain
PROSITE profilePS509669.458581619IPR007527Zinc finger, SWIM-type
PfamPF044340.001593616IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024594621IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MSHVEPTAVG ADQAGEGVVL PHGDGVGGSG GDVATAEAQV AVAVSTSGDE RRGDYGDDAE  60
NEEEEAATVQ GSKEGTEELL RKVVYSEEAA YKLYCDYGHR MGFSIRKGKQ SYFTGTKRIR  120
TKDYFCSKEG LKEGEKLTDT NFNDPHTRTN CRAMVRFRVN DQGEWKVIRL VSDHNHNLAK  180
PEERHLLRSA RSLIAGRSSS VEAMLYGGYQ VQPQLPAGST SATNNVENPK QDLLLGYGAT  240
AKTLTVGTAD VQSLVSHLKS RANEDGMFYW DVQLDRGGRM TNFFWRDGRS RTDYDCFGDV  300
VVFDSTYRLS KQNLVFAPFV GVNHHWQTTM YGCALLADDS TSSFVWLFKS FLESMGNRHP  360
QSIFTNLDQV VSKAVEEVFP NACHRIAHWH IQKNAQSRLG ALNVSKPFNK MFTKCIQGCD  420
SETEFEETWA QMLCEFKLQD NKWLKKLYKL KQKWCSAFNK CTFDGGIEYE PQCDNMSNIF  480
NNVSDKLTSL GAIAVAVDKQ TEDWREKELD EDARCLQKPP ACIIKHSDIL NHAAKVYTHR  540
IYKLFETDFL DGCGATKFKE LPCQDSNTYQ FEMTMQGRGS RVCTVRFNMP TMRLSCSCSK  600
FETMGLLCPH ALKALSIKNI CKIPESYILK RWTKDAKKWV FNPKQYESSY QECMNNEAAY  660
CNYVMRYAYD LVTKSQGQEA LRKVLWENLE SGEKELESYL ENVTQHAPSY PLERITN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96300.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G173300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314955.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A194YQ740.0A0A194YQ74_SORBI; Uncharacterized protein
STRINGSb04g022400.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-84FAR1-related sequence 5