PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G179900.1.p
Common NameSb04g022943, SORBIDRAFT_04g022943
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 201aa    MW: 21319.5 Da    PI: 5.6187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182576156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae Aa a++ a+++l+g+
  Sobic.004G179900.1.p 25 PQYRGVRRRK-WGKWVSEIRQP---GTKVRVWLGSFDSAEAAAVAHDVAALCLRGP 76
                          68*****998.**********8...325**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-122575IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-192685IPR016177DNA-binding domain
SMARTSM003804.1E-352690IPR001471AP2/ERF domain
PROSITE profilePS5103223.0512684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-292685IPR001471AP2/ERF domain
CDDcd000183.36E-172784No hitNo description
PRINTSPR003678.8E-102738IPR001471AP2/ERF domain
PRINTSPR003678.8E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MENHHLQQQQ QQQQQPAAAA TASSPQYRGV RRRKWGKWVS EIRQPGTKVR VWLGSFDSAE  60
AAAVAHDVAA LCLRGPRDAQ LNFPGSAGWL PRPPSTDPAD IRAAAAEAAE RVRREPALVG  120
TSAAAAAEPG AGSRVHAASA SRLDLAVGDE FDDDLASPRL WTEMAEAMLL DPPKWGPDGS  180
DGSDGSGSQH WPQGSLWDAC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-152284163ATERF1
3gcc_A9e-152284163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454007.21e-141ethylene-responsive transcription factor ERF020
TrEMBLA0A194YQC51e-139A0A194YQC5_SORBI; Uncharacterized protein
STRINGSb04g022943.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-21ERF family protein