PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G184200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 507aa    MW: 53227.7 Da    PI: 5.2984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G184200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12329374555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR++i +++ +L+el+P++      + +Ka++Le+ +eY+k Lq
  Sobic.004G184200.1.p 329 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLEEIIEYVKFLQ 374
                           99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.65E-13322378No hitNo description
SuperFamilySSF474598.37E-17322385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.104324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16326384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSRHPTTKQS KMGGFVDPFV PESAWPQDTM FIGSSWPAAG PAGTYLGGAG AAAPDQLHLQ  60
NVSSSSTGAL LNGSAKEIVS LSPVEELHEQ FLSAHLPLPA DDVAPQGLNF EVDSVVLSTP  120
CAISLADSAP VVCCSSNDSS GSEQSGLPPF LLLGVGEQQP AWAPSTFPRI SSLVGEETSQ  180
SCFGFSNHLL REASCAADAK KYPQLGDLPS APLQLHDDVE FDTGKMLSFT PGLGQQLNAS  240
TNFGDLQLSQ KEFSGLHHLN LSGQQLPSFN ATGATHNPEQ SSEVSSGKIG LNAPPFMNRQ  300
EVANGNGAAG SGAPKPRVRA RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNRTDKA  360
SMLEEIIEYV KFLQLQVKVL SMSRLGATEA VVPLLTESQT ESSGGLLLSP RSGSSGRQRA  420
GGGSLPSSEA RDGAAFEQEV AQLMENNMTT AMQYLQSKGL CLMPIALASA ISDQKGSSSA  480
AVQPENGGAK EMLRAVKPLG SPIQGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.161080.0callus| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G184200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749560.0EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313857.10.0uncharacterized protein LOC110434329 isoform X1
TrEMBLA0A194YRK20.0A0A194YRK2_SORBI; Uncharacterized protein
STRINGSb04g023320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-55LJRHL1-like 3