PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G189100.1.p
Common NameSb04g023730, SORBIDRAFT_04g023730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 479aa    MW: 52693 Da    PI: 4.6926
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G189100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3355.11.4e-108653612285
                           XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksn.....................ksneqarrkkmsraQDgiLkYMlkemevcna 69 
                           +lk+rmwkdqmll +l++r     +   a +g ++s+                     +++ + rrk+m raQDg+L++Mlk+me+cna
  Sobic.004G189100.1.p  65 DLKRRMWKDQMLLSKLEGRAGVFRAGGGA-AGPSSSRplappsstasadgaeeeeeeeNPEMRCRRKAMLRAQDGVLRHMLKMMEACNA 152
                           9******************9987655554.66666667888888888888888888889999*************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS- CS
                  EIN3  70 qGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdpp 158
                           +GfvYg i+e g+p++g+sdsLr+WWk++v+fdr gp+a++         +ges       s  h+l+++qD+tlgS+Lsal+qhc pp
  Sobic.004G189100.1.p 153 RGFVYGVIDEAGEPMSGSSDSLRGWWKDNVSFDRSGPMALTAP-------AGESPP--GVASCLHRLQDIQDSTLGSVLSALIQHCVPP 232
                           ****************************************977.......344444..257889************************* PP

                           TTS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHH CS
                  EIN3 159 qrrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfal 246
                           qr+fple+g++pPWWPtG+e+wwg++g ++++qg ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kmsake+ ++
  Sobic.004G189100.1.p 233 QRSFPLERGLAPPWWPTGEEAWWGSQGeVQAHQGVPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSAKETETW 321
                           ***************************************************************************************** PP

                           HHHHTTTTT-S--XXXXXX.XXXXXXXXXXXXXXXXXXXX CS
                  EIN3 247 lsvlnqeekecatvsahss.slrkqspkvtlsceqkedve 285
                           +++l+qee + +++++  + +  +++ +  + ++ +++++
  Sobic.004G189100.1.p 322 SKILRQEETLSRRLKTALKiTPLDGDGDEEHGSSRDDQND 361
                           **************99965433334555555555455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.5E-11265329No hitNo description
Gene3DG3DSA:1.10.3180.109.8E-64204337IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.71E-56207331IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MNHGIHGRRY PFSESAMEHD VAHGGGGGAV PAGEEAFEVA HHQEVEQQEE FSDSESGSEP  60
IEISDLKRRM WKDQMLLSKL EGRAGVFRAG GGAAGPSSSR PLAPPSSTAS ADGAEEEEEE  120
ENPEMRCRRK AMLRAQDGVL RHMLKMMEAC NARGFVYGVI DEAGEPMSGS SDSLRGWWKD  180
NVSFDRSGPM ALTAPAGESP PGVASCLHRL QDIQDSTLGS VLSALIQHCV PPQRSFPLER  240
GLAPPWWPTG EEAWWGSQGE VQAHQGVPPY RKPHDLKKAW KISLLSAVIK HMSPRFDQMR  300
KLVWQSKRLQ QKMSAKETET WSKILRQEET LSRRLKTALK ITPLDGDGDE EHGSSRDDQN  360
DGLEDVVRGV HDKRKRELIS TVDNGGEALV AGLLVADVHL SPMDELLKRY YYGCVPDQQE  420
GAVAPDQNEE AGVMMMPLGE LDLDLCGVVD EVPPDVLFDL IASWSGADED DAFRLMQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-492053351130Protein ETHYLENE INSENSITIVE 3
4zds_B3e-492053351130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G189100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452325.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX166e-92EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLC5XVN50.0C5XVN5_SORBI; Uncharacterized protein
STRINGSb04g023730.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.14e-90EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]