PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G191700.1.p
Common NameSb04g023990, SORBIDRAFT_04g023990
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 363aa    MW: 38945.8 Da    PI: 7.1253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G191700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98e-53191441128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL++k+++ ++   +++  +d++k+ePwdLp +++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd
  Sobic.004G191700.1.p  19 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGVADLNKCEPWDLPYRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKD 106
                           79*************************888.789999***********9888999********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +e+++ +++lvglkktLvfy+grap+g kt Wvmheyrl
  Sobic.004G191700.1.p 107 REIFR-GKALVGLKKTLVFYTGRAPRGGKTGWVMHEYRL 144
                           *****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-638182IPR003441NAC domain
PROSITE profilePS5100557.5519182IPR003441NAC domain
PfamPF023654.6E-2920144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEHDVHHHHH QQPEEAMELP PGFRFHPTDE ELITHYLARK AADPRFAPRA VGVADLNKCE  60
PWDLPYRATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDREIF RGKALVGLKK  120
TLVFYTGRAP RGGKTGWVMH EYRLHGKHAA AAAAASSSSS LIPSVRAGAS KDDWVLCRVF  180
KKSIEPPSSV AGGSKRSSSS VACMGMEDVV GPSRSMADDF AASTLPPLMD VSGGSGGNMS  240
LSAAAAAAAS IELTTPPAPH VTCFSNTLEG HFLTPPTCLL PSAAATASPF LASMAQYDGD  300
AGVGGMVHEL LQEAGGWYSK LGERERLSGG ASQDTGVTSE VNPAEISSTR HHMDHEASFW  360
GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-561318311166NO APICAL MERISTEM PROTEIN
1ut4_B2e-561318311166NO APICAL MERISTEM PROTEIN
1ut7_A2e-561318311166NO APICAL MERISTEM PROTEIN
1ut7_B2e-561318311166NO APICAL MERISTEM PROTEIN
4dul_A2e-561318311166NAC domain-containing protein 19
4dul_B2e-561318311166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.9920.0callus| leaf| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G191700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658980.0BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBankKJ7280210.0KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452340.10.0NAC domain-containing protein 79
RefseqXP_021314112.10.0NAC domain-containing protein 79
TrEMBLC5XVR30.0C5XVR3_SORBI; Uncharacterized protein
STRINGSb04g023990.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-82NAC domain containing protein 100