PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G209700.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 814aa    MW: 92259.9 Da    PI: 9.1603
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G209700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.3e-1753136190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH++
  Sobic.004G209700.2.p  53 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPV 135
                           5*****************9999.6677****************9988.....99*********************************98 PP

                  FAR1  90 a 90 
                           +
  Sobic.004G209700.2.p 136 S 136
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1553137IPR004330FAR1 DNA binding domain
PfamPF105516.0E-29256349IPR018289MULE transposase domain
PROSITE profilePS509668.877543579IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-4550572IPR007527Zinc finger, SWIM-type
SMARTSM005750.001554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MEVEEPLPTS KNPRRARRRD LNALDPSMEE SDGEDIGVPE VGMVFNNHTE VNRFYRKYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK  120
LLHVELAILD HNHPVSPAMA RFLNSYKQLS GPAKRRMRMG GPGAMPIEES SKVPMDKLGE  180
LEQLLFGESK HHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCTRNVF  240
WADARSRAMC EYYSDVITLD TSYVASKYDM PLATFIGVNH HGQSVLMGCA LLSDETAETY  300
SWLLKAWIAC MYGNLPKAIV TDYCRGIQSA VAEVIPGVRH RMCLFQIMRK AAERLGGLSE  360
YRAINKAMHK AVYDSLTIDE FEGEWNTLIT YSGLQGNDWL RSLYECRSSW VPVFIKDTFW  420
AGMSATQRNE TITPFFDGYV DLKTTLKQFL GKYEMALQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNMFKKF QDEIEAIMYC HVSLIGVDGP VSTFNVKECI FLEDGKRTMS  540
KIFAVTYKAD EKNISCICGG FQFSGILCRH SLSMLKFQLV REIPQHYILD RWKKDFRQLH  600
VKRRPPSDLV PNNRMDRYDY LSMRCLQLVD SAVLSDKYRL ALRLVRETEK FLLNSNTHDD  660
TQPRIKSRVP KVNKSNTVPG QTVVGAATGN RNDGLKGPEA PAVMQVPQIQ KGGAEKGIVP  720
TGYIGVPANI QQFVGSQAAF QPSIVYMVPS GVDPHAFGNV LMPVMYQQMF QVPPKPNETM  780
QDTSANEKRK RPRGQKLTET SQQANGAPAS ASG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.100360.0embryo| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G209700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315775.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A194YQY00.0A0A194YQY0_SORBI; Uncharacterized protein
STRINGSb04g025530.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-141FAR1-related sequence 6