PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G225400.1.p
Common NameSb04g026970, SORBIDRAFT_04g026970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 223aa    MW: 23113.2 Da    PI: 10.4412
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G225400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.75.2e-35571629115
                   TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaak 96 
                           +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++  +ss  s+s+sss+ ++a+++  
  Sobic.004G225400.1.p  57 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIMAATGSGTTPAVFV--SSSAPSTSSSSSHyHQATATVL 143
                           89*******************************************************99999555..2222222222223233333334 PP

                   TCP  97 skksqksaasalnlakesr 115
                           +k+++++  +a   a  s 
  Sobic.004G225400.1.p 144 GKRQREEGDAAMGTAPASA 162
                           4444444443333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3156141IPR005333Transcription factor, TCP
PROSITE profilePS5136926.95556110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATTRDVSTA AAAAAAMFHV YQPMPMPMPS TAAAADAGAM VPAPATKQVK REGGGGKDRH  60
SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSIMAA TGSGTTPAVF  120
VSSSAPSTSS SSSHYHQATA TVLGKRQREE GDAAMGTAPA SAFWAALPAA AAPRTTEAWG  180
FSPLEAQAAA AYVPMAQAQH HHHLNLLAAL SGAARRAEEE TR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G225400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276991e-151KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452500.11e-158transcription factor TCP7
SwissprotQ9FMX22e-40TCP7_ARATH; Transcription factor TCP7
TrEMBLC5XY731e-157C5XY73_SORBI; Uncharacterized protein
STRINGSb04g026970.11e-158(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-33TCP family protein