PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G238400.1.p

Common Name

Sb04g028040, SORBIDRAFT_04g028040

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Nin-like

Protein Properties

Length: 240aa MW: 27930.8 Da PI: 8.3442

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G238400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.5	5.5e-28	69	119	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ke+++e++s++Fs pik+AA+eL+v++TvLK++CR++GI+RWPhRk+ksl Sobic.004G238400.1.p 69 KKELTFEQVSRHFSVPIKQAARELNVGVTVLKKQCRKLGIPRWPHRKVKSL 119 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.28	54	139	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-23	72	119	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEDRRFYEED DWYFQFQDFS FWAQMEEKED AHRKSKEGDC EMAPIESANV QTTAAEIPGH 60 RGGGSSETKK ELTFEQVSRH FSVPIKQAAR ELNVGVTVLK KQCRKLGIPR WPHRKVKSLQ 120 KLIDNVQGLG KENAQENEHL TRSLVGFMQQ TMKLLGERPD VMLDQRTEEI SQVCFKDKEN 180 NAQEEGHLIR SVVEFLQLTK KMIQERPDVI LDQRTKHLRQ VCFKESFKRK RLVGGHGTW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G238400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452555.1	1e-163	protein RKD3
TrEMBL	A0A1Z5RPV3	1e-178	A0A1Z5RPV3_SORBI; Uncharacterized protein
STRING	Sb04g028040.1	1e-162	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-30	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sobic.004G238400.1.p
Entrez Gene	8075710