PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G239400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 217aa MW: 24287.8 Da PI: 8.2913

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G239400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.6	1.1e-09	23	56	56	89
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHel 89 a+ rt+Cka++++++++d+ w++++++ eHnH++ Sobic.004G239400.1.p 23 ATCRTDCKAMIRLHRTSDHGWVISSFVAEHNHPC 56 5679****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-7	23	56	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MLVVDSDFLF FSPKGLCLNS MAATCRTDCK AMIRLHRTSD HGWVISSFVA EHNHPCSGTY 60 GQNKQWLSHS DIDPMTKDFV RKLRDNNIPI GRVCSILGVH GSESAIPIRK EAVRSLCARI 120 AQDNIKDDIG KTMSLLDNMK TNDVGMEIRF KLDDDEKIKS MLWCTGKNRA DYAKFGDVVT 180 FDTTYRTNLY NLPFGLFVGV NNHFQTLSGL SPSSQK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G239400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	1e-106	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1Z5RPG1	1e-161	A0A1Z5RPG1_SORBI; Uncharacterized protein
STRING	Pavir.J24972.1.p	3e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-21	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Sobic.004G239400.1.p