PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G250000.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27569.4 Da    PI: 9.8497
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G250000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.3e-291059251
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+lye+ss
  Sobic.004G250000.3.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYEFSS 59
                          8***********************************************96 PP
2K-box78.12.2e-2678170698
                 K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                           g+++++++   +q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq+Le++Le sl++iR +K+++l+++ieel +k   +++en++L
  Sobic.004G250000.3.p  78 GTNNATSELMLWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQSLESHLEMSLRSIRMRKDHILKSEIEELHRKGSLIHQENMEL 166
                           55578888999*****************************************************************************9 PP

                 K-box  95 rkkl 98 
                            + +
  Sobic.004G250000.3.p 167 GRTV 170
                           8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.38161IPR002100Transcription factor, MADS-box
CDDcd002655.15E-44276No hitNo description
SuperFamilySSF554551.1E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2584169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59786179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYEFSST  60
NMKAVIDRYG KAKEEQIGTN NATSELMLWQ REAASLRQQL HNLQESHKQL MGEELSGLGV  120
RDLQSLESHL EMSLRSIRMR KDHILKSEIE ELHRKGSLIH QENMELGRTV DVMSQQKVEL  180
HRKLQASEPR GVADASSSTP YSFSITTQYA DVPANLEQRQ SQQKEGDRRK ELMAPELGLQ  240
LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21174174MEF2C
5f28_B2e-21174174MEF2C
5f28_C2e-21174174MEF2C
5f28_D2e-21174174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.72151e-149leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedling roots and shoots (PubMed:14701936). Highly expressed in young leaves (PubMed:23463009). {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:23463009}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G250000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315544.11e-177MADS-box transcription factor 57-like isoform X3
SwissprotQ6Z6W21e-129MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A1Z5RNZ61e-176A0A1Z5RNZ6_SORBI; Uncharacterized protein
STRINGPavir.Ab02921.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-89AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]