PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G251300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 342aa    MW: 37064.5 Da    PI: 4.3829
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G251300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2078131356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Sobic.004G251300.1.p  78 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 131
                           5678*************************************************9 PP
2HD-ZIP_I/II130.85.2e-4277168192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ + +++++Lr+
  Sobic.004G251300.1.p  77 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDVILQDNHRLRS 165
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           ++ 
  Sobic.004G251300.1.p 166 QVV 168
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.53E-2071135IPR009057Homeodomain-like
PROSITE profilePS5007118.2273133IPR001356Homeobox domain
SMARTSM003892.0E-2076137IPR001356Homeobox domain
CDDcd000862.21E-2078134No hitNo description
PfamPF000467.8E-1878131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-2279140IPR009057Homeodomain-like
PRINTSPR000312.2E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6113129IPR000047Helix-turn-helix motif
PfamPF021836.3E-17133175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESGRLIFNA PGSGAGQMLF LDCGAAGGPG GGGGGGLFHR GGRPMLGLEE GRGVKRPFFT  60
SPDELLEEEY YDEQLPEKKR RLTPEQVHLL ERSFEEENKL EPERKTELAR KLGLQPRQVA  120
VWFQNRRARW KTKQLERDFD RLKASFDALR ADHDVILQDN HRLRSQVVSL TEKLQEKEAT  180
EGGASAATDA AAALPAVDDV KASLADDVEE PTEPAAEEEE AAFEVQQVKS EDRLSTGSGG  240
SAVVDTDALL YGAGCRFAAA VDSSVESYFP GGEDHHYHDC GMGPVNHGAG GGIQSDDDGA  300
GSDEGCSYYA EEEAAAFFAG HTHHHADDDE DAGQISWWMW N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.33311e-136callus| embryo| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G251300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670170.0BT067017.1 Zea mays full-length cDNA clone ZM_BFb0151L17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314788.10.0homeobox-leucine zipper protein HOX16-like isoform X1
SwissprotA2X9801e-143HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
TrEMBLA0A194YRG90.0A0A194YRG9_SORBI; Uncharacterized protein
STRINGSb04g029080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-61homeobox 1