PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G267000.2.p
Common NameSb04g030510, SORBIDRAFT_04g030510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 98aa    MW: 10864.8 Da    PI: 9.7378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G267000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09449345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT    +l+ +a + + ++   +W+ Iar +g g+t++++k +++
  Sobic.004G267000.2.p  4 SWTDSQNKLFERALAVYDKDtpdRWHNIARAVGCGKTAEDVKRHYR 49
                          7********************************99**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.945156IPR017884SANT domain
SMARTSM007172.0E-7154IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-13360IPR009057Homeodomain-like
PfamPF002497.9E-7449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-4457IPR009057Homeodomain-like
CDDcd001671.40E-5449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSSWTDSQN KLFERALAVY DKDTPDRWHN IARAVGCGKT AEDVKRHYRW LKRDVQQIES  60
GEGGQGSHSS NSSGSGSSSN SCGRNNDDKR MRHPKPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-205621167RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G267000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794521e-123HF679452.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB46 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454420.13e-67protein RADIALIS-like 3
SwissprotQ1A1738e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLC5Y0B37e-66C5Y0B3_SORBI; Uncharacterized protein
STRINGSb04g030510.11e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-25RAD-like 6