PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G267400.1.p
Common NameSb04g030530, SORBIDRAFT_04g030530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 360aa    MW: 37275.3 Da    PI: 6.7282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G267400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09163210455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Sobic.004G267400.1.p 163 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 210
                           8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.25E-10157214No hitNo description
SuperFamilySSF474591.96E-16157224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DRFSAMCSAF GYLQEWPDLG AMCGANLAVP AVAAAAAPSA  60
GDGNDSSSCS GSGGIRKRRP DAYLDAKGGA NDMSKRPRGK QLTGLSEIAA PGKGKQERPK  120
AGTKKKAEAA STAAAAAAAA AAAAGQKTDY IHVRARRGQA TDSHSLAERV RRERISERMR  180
YLQELVPGCS KVTGKAGMLD EIINYVQSLQ KQVEFLSMKI AASNPVVSFD IVEDLFGRQL  240
KQAAALPAMA LPAGQLEPSC LQMSPMQQVH PSAAAGGSTG FGLEMVVNNL YAPAAASCPV  300
SAAPSVSAAA GPSTIEPCLN VNGTAAAWDI GAQNLFSGFD AQFQSVESDC LLDNLKMEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.116120.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G267400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412380.0BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds.
GenBankKJ7279450.0KJ727945.1 Zea mays clone pUT6041 bHLH transcription factor (bHLH11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452680.10.0transcription factor bHLH76
TrEMBLC5Y0B60.0C5Y0B6_SORBI; Uncharacterized protein
STRINGSb04g030530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-36cryptochrome-interacting basic-helix-loop-helix 1