PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.004G269900.1.p

Common Name

Sb04g030770, SORBIDRAFT_04g030770

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRF

Protein Properties

Length: 407aa MW: 43085 Da PI: 7.5304

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G269900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.8e-25	123	167	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Sobic.004G269900.1.p 123 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 167 79****************************************997 PP
2	QLQ	60.8	3.9e-21	60	95	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q+l+yKyL+a++PvPp+L+++i++ Sobic.004G269900.1.p 60 PFTPAQYEELEQQALIYKYLVAGVPVPPDLVVPIRR 95 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-12	59	95	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.2E-15	60	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.949	60	95	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.486	123	167	IPR014977	WRC domain
Pfam	PF08879	4.2E-21	124	166	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MAMPYASLSP AGADHRSSTA TAASLLPFCR STPLSAGGGG GLGEDAQLSS RWPAARPVVP 60 FTPAQYEELE QQALIYKYLV AGVPVPPDLV VPIRRGLDSL ATRFYGHPTL GGYGTYYLGK 120 KLDPEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVETQLV PQSQPPATAA 180 AVSAAPPLAL AAATTTTNGS CFQNHSLYPA IAGSTGGGGG ASNISTPFSS SMGSSQLHMD 240 NAASYAALGG GTAKDLRYNA YGIRSLAEEH NQLIAEAIDS SMENQWRLPP SQTSSFPLSS 300 YPQLGALSNL GQSTVTSLSK MERQQPLSFL GNSEFGAMES AAKQQENQTL RPFFDEWPKA 360 RDSWPGLSDD NAASLAPSFP ATQLSMSIPM ASSDFSVASS QSPNDD*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MAMPYASLSP AGADHRSSTA TAASLLPFCR STPLSAGGGG GLGEDAQLSS RWPAARPVVP  60
FTPAQYEELE QQALIYKYLV AGVPVPPDLV VPIRRGLDSL ATRFYGHPTL GGYGTYYLGK  120
KLDPEPGRCR RTDGKKWRCS KEAAPDSKYC ERHMHRGRNR SRKPVETQLV PQSQPPATAA  180
AVSAAPPLAL AAATTTTNGS CFQNHSLYPA IAGSTGGGGG ASNISTPFSS SMGSSQLHMD  240
NAASYAALGG GTAKDLRYNA YGIRSLAEEH NQLIAEAIDS SMENQWRLPP SQTSSFPLSS  300
YPQLGALSNL GQSTVTSLSK MERQQPLSFL GNSEFGAMES AAKQQENQTL RPFFDEWPKA  360
RDSWPGLSDD NAASLAPSFP ATQLSMSIPM ASSDFSVASS QSPNDD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in developing leaves. {ECO:0000269\|PubMed:24854713, ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in developing leaves (PubMed:26036253). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function and the transition between cell division and cell expansion in growing leaves (PubMed:26036253). {ECO:0000269\|PubMed:26036253}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G269900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727972	0.0	KJ727972.1 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314467.1	0.0	LOW QUALITY PROTEIN: growth-regulating factor 4
Swissprot	A0A060D764	0.0	GRF1_MAIZE; Growth-regulating factor 1
TrEMBL	C5Y0D6	0.0	C5Y0D6_SORBI; Uncharacterized protein
STRING	Sb04g030770.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-42	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Sobic.004G269900.1.p
Entrez Gene	8073168

Publications ? help Back to Top
Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Nelissen H, et al. Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf. Plant Cell, 2015. 27(6): p. 1605-19 [PMID:26036253]