PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G270600.2.p
Common NameSb04g030830, SORBIDRAFT_04g030830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 218aa    MW: 24023.1 Da    PI: 8.2276
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G270600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.11.1e-091203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m++kgLtl+h+kSHLQkYRl
  Sobic.004G270600.2.p  1 MGMKGLTLYHLKSHLQKYRL 20
                          899****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-8121IPR009057Homeodomain-like
PfamPF143792.5E-2465109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGMKGLTLYH LKSHLQKYRL GKQSKKDTGL EASRGAFAAQ GINFSTPVPP SIPSTASNNT  60
GETPLADALK YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QTILEKAQSN LSYDATGGAN  120
LEATRSQLTD FNLALSGFMD NVTQVCEQKN GELAKAMSED GLRASNNLGF QLYHHGVQDR  180
DDVKCATDEG LLLLDLNIRG GYDHRASADL KMNQHMR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G270600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0874410.0BT087441.1 Zea mays full-length cDNA clone ZM_BFb0077P10 mRNA, complete cds.
GenBankKJ7279550.0KJ727955.1 Zea mays clone pUT6053 G2-like transcription factor (GLK11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454431.11e-160myb family transcription factor PHL11
RefseqXP_021314548.11e-160myb family transcription factor PHL11
TrEMBLA0A1Z5RP691e-159A0A1Z5RP69_SORBI; Uncharacterized protein
STRINGSb04g030830.11e-159(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-37G2-like family protein