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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.004G270900.3.p |
| Common Name | Sb04g030850, SORBIDRAFT_04g030850 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
bHLH |
| Protein Properties |
Length: 474aa MW: 52680 Da PI: 5.3109 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.004G270900.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35 | 2.6e-11 | 273 | 319 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ Lr+l P++ +K++ a+i+ A++YI++L
Sobic.004G270900.3.p 273 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIDYINEL 319
68899***********************.....9***************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0048658 | Biological Process | anther wall tapetum development |
| GO:0052543 | Biological Process | callose deposition in cell wall |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTDVEQQN FRLAPFIIED HSNPANLTSE 60
PARVIDQIHH QLGIDMEQDH SDHMIQGVPP AETANLVPVV YGVQDRILSH QIEGPHNITV 120
EQQVLDYDPA SYGNGTYAAA HDLLNSLQIQ RCSLIPEFPS TEHIFGDPAQ NMVNPLDITN 180
DLQGVATHES GMMFSDSTLP LGYHATQSHM LKDLYHSLPQ NYGIFTSDDE RDGMVGVAGV 240
SGNIFQEIDG RQFDSPVLGT RRQKGGFGKG KGKANFATER ERREQLNVKY GALRSLFPNP 300
TKNDRASIVG DAIDYINELN RTVKELKILL EKKRNSTDRR KILKLDDEAA DDGESSSMQP 360
VSDDQNNQMN GAIRSSWVQR RSKECDVDVR IVDDEINIKF TEKKRANSLL CAAKVLEEFR 420
LELIHVVGGI IGDHHIFMFN TKIPKGSSVY ACAVAKKLLE AVEIKKQALN IFN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962797 | 0.0 | EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
