PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G280500.1.p
Common NameSb04g031710, SORBIDRAFT_04g031710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 435aa    MW: 45794 Da    PI: 9.1642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G280500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.14.8e-30103195189
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ 
  Sobic.004G280500.1.p 103 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLSFEDSAGKHWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDTVSFSRA 191
                           89***************************955556888*************************************************66 PP

                           SSSE CS
                    B3  86 grse 89 
                             ++
  Sobic.004G280500.1.p 192 AAED 195
                           4333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4095207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29100209IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-25101190No hitNo description
SMARTSM010192.8E-20103208IPR003340B3 DNA binding domain
PROSITE profilePS5086314.663103206IPR003340B3 DNA binding domain
PfamPF023622.7E-27103203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDQFAASGRF SREEEADEEQ EDASNSMREI SFMPAAAAAG TAPSSSAAAS AASTSASASA  60
ASGSSSAAAP FRSASGDAAG ASGSGGGGGA AADVEAVEKE HMFDKVVTPS DVGKLNRLVI  120
PKQYAEKYFP LDAAANEKGL LLSFEDSAGK HWRFRYSYWN SSQSYVMTKG WSRFVKEKRL  180
VAGDTVSFSR AAAEDARHRL FIDWKRRVDT RGPLRFSGLA LPMPLASHYG PHHYSPWGFG  240
IGGVGGGGGG GGFFMPPSPP ATLYEHRLRQ GLDFRSMTNY PAPTVGRQQL LFFGSARMPP  300
HHAPAPQPRP LSLPLHHFTV QPSAAAGVTA ASRPVVLDSV PVIESPTTAA KRVRLFGVNL  360
DNNPLSEPDG GVGEASHQGN ALSLQMPGWQ QRTTPTLRLL ELPRHGAAES SAASSPSSSS  420
SSKREARSAL DLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-56982073113B3 domain-containing transcription factor NGA1
5os9_B1e-56982073113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G280500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884010.0BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452747.20.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-140Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLC5Y0X20.0C5Y0X2_SORBI; Uncharacterized protein
STRINGSb04g031710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]