PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G285300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 318aa    MW: 34156.7 Da    PI: 11.0922
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G285300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-312376255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+
  Sobic.004G285300.1.p 23 PRLRWTSELHRNFVRAVDCLGGQDKATPKLILQLMGVRGLTIAHVKSHLQMYRS 76
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.161979IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-311977IPR009057Homeodomain-like
SuperFamilySSF466895.2E-162176IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-242376IPR006447Myb domain, plants
PfamPF002497.9E-82475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGGAAGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDKATP KLILQLMGVR  60
GLTIAHVKSH LQMYRSSGHD IRKREMQPRL RHLKHSFTID EGGPKEFICP PMKRAEAAGP  120
EAAATATATH ESMQGNSDMG APGTRRCGDD YTRAIPMGSS RRITEGLGGW QQWQRDAAAR  180
AATAASTLRE LGFWVRGTEE PFKTGRPIAN RHSPVARQLS SKEIKGENGR FLCGTAAATR  240
DEAAARRRSP SSRPPASSID PKAVAAVSWW PSEEGGCVLP PLSSSTSLSA CSGPSGSCIF  300
ARQRRVNLDL SLSICGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G285300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704700.0EU970470.1 Zea mays clone 346178 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313833.11e-174uncharacterized protein LOC8076046
TrEMBLA0A194YT680.0A0A194YT68_SORBI; Uncharacterized protein
STRINGSb04g032130.11e-161(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-24G2-like family protein